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NDKmol - molecular viewer

NDKmol - molecular viewer

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NDKmol - molecular viewer 截图

NDKmol - molecular viewer NDKmol - molecular viewer NDKmol - molecular viewer NDKmol - molecular viewer

NDKmol - molecular viewer 描述

NDKmol -- Molecular Viewer for Android
== About ==
NDKmol is a molecular viewer for Android. You can view three dimensional structures of proteins, nucleic acids and small molecules. NDKmol supports most of common representations for molecules, such as ribbon, trace, stick, sphere and line. NDKmol also supports symmetry operations; biological assemblies and crystal packing can be displayed. You can search and download structures from RCSB PDB and NCBI Pubchem.
NDKmol has almost same functionality as GLmol, which is written in
WebGL/Javascript and runs on Web browsers. You can try GLmol at http://webglmol.sourceforge.jp/index-en.html
== Features ==
* Read PDB or SDF/MOL file
* Rotate/Translate/Zoom model by finger
* Representations
- Line
- Stick
- Sphere(van der Waals radius)
- Alpha carbon trace
- Ribbon (Thin or Thick)
- Strand
- B factor tube
- Nucleic acid ladder
- Nucleic acid line
- solvent 'stars'
* Smoothing of beta-sheets
* Coloring
- By chain
- By secondary structure(when defined in SHEET/HELIX records)
- By Elements
- Gradation (a.k.a chainbow)
- B factor
- polar/nonpolar
* Crystallography
- Display unit cell
- Show crystal packing (when defined in REMARK section)
- Display biological assembly (when defined in REMARK section)
== How to Use ==
When launched, NDKmol automatically loads Porin (PDBID: 2POR) as an example. You can rotate the molecule by your finger.
To zoom or translate the molecule, press MENU button in your phone/tablet and select the mode. Two-finger gestures are also supported.
Everything else can be done from the MENU.
To load other PDB files, please put the file in "PDB" directory of the SD card and select "Open" command in the MENU. You can also download structures directly from RCSB PDB and NCBI PubChem web server. Select "Search and Download" in the menu.
== Contact ==
Project website is located at http://webglmol.sourceforge.jp/ . You can get source codes for this program from here.
Comments and suggestions are welcome at http://sourceforge.jp/projects/webglmol/forums/ or biochem_fan@users.sourceforge.jp
=== LICENSE notice ===
NDKmol itself is licensed under GNU Lesser General Public License as follows.
However, PDB files included as examples are under DIFFERENT conditions.
Please consult
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/pdb_advisory.html
-------------
NDKmol - Molecular Viewer for Android
(C) Copyright 2011, biochem_fan
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this program. If not, see .
- 分子NDKmol Android的浏览器
== ==
NDKmol是一种分子的观众为Android。您可以查看三维结构的蛋白质,核酸和小分子。 NDKmol支持最常见的陈述的分子,如丝带,跟踪,棒,球和线路。 NDKmol还支持对称操作,可以显示生物组件和晶体堆积。您可以搜索和下载RCSB PDB和NCBI PubChem数据库结构。
具有几乎相同的功能NDKmol为GLmol,这是写在
WebGL的/ Javascript和Web浏览器上运行。您可以尝试在http://webglmol.sourceforge.jp/index-en.html GLmol的
==特点==
*浏览PDB或SDF / MOL文件
*旋转/平移/缩放模式,通过手指
*陈述
     - 线路
     - 坚持
     - 球(范德华半径)
     - 阿尔法碳跟踪
     - 色带(薄或厚)
     - 斯特兰德
     - B因子管
     - 核酸阶梯
     - 核酸线
     - 溶剂“明星”
*平滑的β-折叠片
*着色
     - 链
     - 二级结构(片/螺旋记录定义时)
     - 由元素
     - 渐变(a.k.a chainbow)
     - B因子
     - 极性/非极性
*晶体
     - 显示单元细胞
     - 晶体包装(定义时在备注部分)
     - 显示生物组件(定义时在备注部分)
==如何使用==
启动时,自动加载NDKmol孔蛋白(PDBID:2POR)作为一个例子。你可以通过你的手指旋转分子。
 
要放大或翻译分子,按MENU按钮,在您的手机/平板电脑,并选择模式。也支持两个手指的手势。
一切可以从菜单进行。
要加载其他的PDB文件,请把文件的SD卡在“PDB”目录,选择菜单中的“打开”命令。您也可以直接从RCSB PDB和NCBI PubChem数据库Web服务器下载结构。选择在菜单中的“搜索下载”。
==联系==
项目网站位于http://webglmol.sourceforge.jp/的。从这里,你可以得到这个程序的源代码。
如有意见和建议,欢迎,在http://sourceforge.jp/projects/webglmol/forums/或biochem_fan@users.sourceforge.jp的
===许可通知===
NDKmol本身是GNU通用公共许可证下授权如下。
然而,PDB文件包括的例子是在不同的条件下。
请咨询
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/pdb_advisory.html
-------------
- 分子NDKmol Android的浏览器
     版权所有(C)2011,biochem_fan
     这一程序是自由软件:您可以重新分配和/或修改
     根据公布的GNU通用公共许可证的条款
     自由软件基金会,无论是第3版的许可证,
     (在你的选项)任何更新的版本。
     这个程序是分布式的希望,这将是有用的,
     但没有任何担保,甚至没有隐含的担保
     适销性或针对特定用途的适用性。请参阅
     GNU通用公共许可证的更多细节。
     你应该已经收到一份GNU通用公共许可证
     随着这一计划。如果没有看到。

NDKmol - molecular viewer 更新内容

Version 0.95 (20150503)
* Fixed "Search PubChem" to work with recent server update
* Hopefully this version should work on Android 5. (Tested in Android 5.1 on Nexus 7)
If not, please send me details.
* Can open MRC map files (BETA)
To users of devices without MENU button:
there should be a way to open MENU, for example, pressing
HOME button long. Please consult the manual of your device.

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大小
670.45K
分类
教育培训 其它
TAG
更新
版本
0.95
要求
Android 2.2.x 以上
查看权限要求
来自
Google Play

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